Work experience

Jan 2014 - Present
Research Scientist @ Fraunhofer MEVIS, Bremen, Germany

  • Medical image analysis with deep learning and machine learning techniques
    • Automatic organ segmentation in CT and MR
    • Automatic liver lesion detection and segmentation in CT and MR
    • Automatic vessel segmentation in contrast-enhanced CT and MR
    • Real-time catheter segmentation in fluoroscopy images
    • Explainability and uncertainty estimation of CNN-models
    • Automatic anomaly detection
    • Statistical shape models
  • Developer of an internal deep learning framework RedLeaf
  • Standalone and web application development
  • Mentoring
  • Project acquisition

Sep 2013 - Dec 2013
Junior Software Developer @ Samsung Electronics, Łódź, Poland

  • Mobile product development
  • Responsible for firmware-over-the-air updates and the home screen app

Jul 2012 - Sep 2012
Summer Placement @ Fraunhofer MEVIS, Bremen, Germany

  • Software development with MeVisLab within the MAVO FUS project regarding focused ultrasound therapy

Aug 2011
Placement @ Foundation for Cardiac Surgery Development, Zabrze, Poland

  • Software development with LabVIEW for MAXON EC motor control

Aug 2010
Internship @ Regional Hospital, Raciborz, Poland

  • Medical equipment repair and maintenance

Education

2017 - Present
External PhD Candidate @ Radboud University Medical Center, Nijmegen, The Netherlands

  • Research Topic: "Automatic Liver Analysis with Deep Learning"
  • Supervisors: Prof. Bram van Ginneken, Prof. Horst Karl Hahn

2013
Visiting Student @ ETH Zurich, Zurich, Switzerland

  • Carrying out a Master's thesis project within the FUSIMO European project

2013
MSc in Electronics and Telecommunications @ Wrocław University of Technology, Wrocław, Poland

  • Thesis: "Uncertainty Formulation of Motion Models for Abdominal Organs"
  • Awarded with distinction

2012
BSc in Biomedical Engineering @ Wrocław University of Technology, Wrocław, Poland

  • Thesis: "Design of a Linear Ultrasonic Probe for Dynamic Beam Focusing"
  • Awarded with distinction

Achievements

2017

  • 3rd place in the MICCAI 2017 round of the international Liver Tumor Segmentation Challenge.

2013

  • 13th place in the Global S-TopCoder 2013 November Competition organized internationally for all Samsung employees.
  • Best thesis award of the Faculty of Electronics, Wrocław University of Technology.
  • Award in the TOP10 contest for 10 best graduates of the Faculty of Electronics, Wrocław University of Technology.
  • Received the Zeno Karl Schindler Foundation Scholarship Grant for carrying research at ETH Zurich.

2008 - 2011

  • Continuous recipient of the the Ministry of Higher Education Scholarship awarded nationwide to approximately top 5% students enrolled in the highest priority majors.

Languages

Polish (native) • English (fluent) • German (fluent) • Russian (novice)

Skills

Computing & IT

  • Python, C++, C, JavaScript, Matlab, shell scripting, LaTeX
  • TensorFlow, Keras, Theano, Lasagne, scikit-learn, scikit-image, numpy, scipy, pandas, OpenCV
  • MeVisLab, PyCharm, MS Visual Studio, Xcode, LabVIEW, Docker
  • HTML, CSS, Angular, Bootstrap
  • git, subversion, JIRA issue tracing, Confluence
  • ISTQB Certified Tester, Foundation level

Courses

  • Academic Communication and Presentation
  • Project Management at Fraunhofer
  • Project Management
  • Scrum Basics

Others

  • Category B driving license (non-commercial passenger vehicles)